Prof. Dr. Michael Matschiner

Lebenslauf

Publikationsliste

Google Scholar: R0SHyeUAAAAJ
ORCID: 0000-0003-4741-3884

2024

Burriel-Carranza B, Mochales-Riaño G, Talavera A, Els J, Estarellas M, Al Saadi S, Urriago Suarez JD, Olsson PO, Matschiner M, Carranza S (2024) Clinging on the brink: Whole genomes reveal human-induced population declines and severe inbreeding in the Critically Endangered Emirati Leaf-toed Gecko (Asaccus caudivolvulus). Molecular Evolution, e17451. pdf.

Koppetsch T, Malinsky M, Matschiner M (2024) Towards reliable detection of introgression in the presence of among-species rate variation. Systematic Biology, syae028. pdf.

Hofmann S, Rödder D, Andermann T, Matschiner M, Riedel J, Baniya CB, Flecks M, Yang J, Jiang K, Jianping J, Litvinchuck SN, Martin S, Masroor R, Nothnagel M, Vershinin V, Zheng Y, Jablonski D, Schmidt J, Podsiadlowski L (2024) Exploring Paleogene Tibet's warm temperate environments through target enrichment and phylogenetic niche modelling of Himalayan spiny frogs (Paini, Dicroglossidae). Molecular Evolution, e17446. pdf.

Valero-Gracia A, Roberts NG, Yap-Chiongco M, Capucho AT, Kocot KM, Matschiner M, Struck T (2024) First chromosome-level genome assembly of a ribbon worm from the Hoplonemertea clade, Emplectonema gracile, and its structural annotation. Genome Biology and Evolution, evae127. pdf.

Vences M, Patmanidis S, Schmidt JC, Matschiner M, Miralles A, Renner S (2024) Hapsolutely: a user-friendly tool integrating haplotype phasing, network construction, and haploweb calculation. Bioinformatics Advances, 4:vbae083. pdf.

Somer-Trembo C, Santos ME, Clark B, Werner M, Fages A, Matschiner M, Hornung S, Ronco F, Oliver C, Garcia C, Tschopp P, Malinsky M, Salzburger W (2024) The genetics of niche-specific behavioral tendencies in an adaptive radiation of cichlid fishes. Science, 384:470-475. pdf.

Schiavon L, Ceballos S G, Matschiner M, Trucchi E, La Mesa M, Riginella E, Lucassen M, Mark FC, Bilyk K, Franch R, Walberg A, Boscari E, Zane L, Papetti C (2024) Limited interspecific gene flow in the evolutionary history of the icefish genus Chionodraco. ICES Journal of Marine Science, fsae019. pdf

Tsuboi M, Kopperud BT, Matschiner M, Grabowski M, Syrowatka C, Pélabon C, Hansen TF (2024) Antler allometry, the Irish elk and Gould revisited. Evolutionary Biology, 51:149-165. pdf.

2023

Lifjeld JT, de Gabriel Hernando M, Fuertes Marcos B, Grønstøl G, Anmarkrud JA, Matschiner M, Leder EH (2023) Rapid sperm length divergence in a polygynandrous passerine: a mechanism of cryptic speciation?. Evolution, 77:2352-2364. pdf.

Yu L, Khachaturyan M, Matschiner M, Healey A, Bauer D, Cameron B, Cusson M, Duffy JE, Fodrie FJ, Gill D, Grimwood J, Hori M, Hovel K, Hughes AR, Jahnke M, Jenkins J, Keymanesh K, Kruschel C, Mamidi S, Menning DM, Moksnes P-O, Nakaoka M, Pennacchio C, Reiss K, Rossi F, Ruesink JL, Schultz ST, Talbot S, Unsworth R, Ward DH, Dagan T, Schmutz J, Eisen JA, Stachowicz JJ, Van de Peer Y, Olsen JL, Reusch TBH (2023) Ocean current patterns drive the worldwide colonization of eelgrass (Zostera marina). Nature Plants, 9:1207-1220. pdf.

Bista I, Wood JMD, Desvignes T, McCarthy SA, Matschiner M, Ning Z, Tracey A, Torrance J, Sims Y, Chow W, Smith M, Oliver K, Haggerty L, Salzburger W, Postlethwait J, Howe K, Clark MS, Detrich III WH, Cheng C-HC, Miska EA, Durbin R (2023) Genomics of cold adaptations in the Antarctic notothenioid fish radiation. Nature Communications, 14:3412. pdf. code.

Johannessen L-E, Johnsen A, Koppetsch T, Lifjeld JT, Matschiner M, Søli GEE, Voje KL (2023) Arctic Specimens in the zoological collections at the Natural History Museum, University of Oslo, Norway (NHMO). Collections: A Journal for Museum and Archives Professionals, 19:380-399. pdf.

Reinar WB, Tørresen OK, Nederbragt AJ, Matschiner M, Jentoft S, Jakobsen KS (2023) Teleost genomic repeat landscapes in light of diversification rates and ecology. Mobile DNA, 14:14. pdf.

Barth JMI, Handley S, Kintzl D, Leonard G, Malinsky M, Matschiner M, Meyer BS, Salzburger W, Stefka J, Trucchi E (2023) The history and organization of the Workshop on Population and Speciation Genomics. BMC Evolution: Education and Outreach, 16:2. pdf.

Schiavon L, Negrisolo E, Battistotti A, Lucassen M, Damerau M, Harms L, Riginella E, Matschiner M, Zane L, La Mesa M, Papetti C (2023) Species identification and population genetics of the Antarctic fish genera Lepidonotothen and Nototheniops (Perciformes, Notothenioidei). Zoologica Scripta, 52:136-153. pdf

2022

Muschick M, Nikolaeva E, Rüber L, Matschiner M (2022) The mitochondrial genome of the red icefish (Channichthys rugosus) casts doubt on its species status. Polar Biology, 45:1541-1552. . pdf.

Matschiner M (2022) Species tree inference with SNP data. In: Plant Comparative Genomics (eds Pereira-Santana A, Gamboa-Tuz SD, Rodríguez-Zapata LC), pp. 23-44. Humana, New York, USA. pdf.

Matschiner M, Barth JMI, Tørresen OK, Star B, Baalsrud HT, Brieuc MSO, Pampoulie C, Bradbury I, Jakobsen KS, Jentoft S (2022) Supergenes origin and maintenance in Atlantic cod. Nature Ecology & Evolution, 6:469-481. pdf. code. — News & Views commentary by Anna Tigano.

Baumdicker F, Bisschop G, Goldstein D, Gower G, Ragsdale AP, Tsambos G, Zhu S, Eldon B, Ellerman CE, Galloway JG, Gladstein AL, Gorjanc G, Guo B, Jeffery B, Kretzschmar WW, Lohse K, Matschiner M, Nelson D, Pope NS, Quinto-Cortéz CD, Rodrigues MF, Saunack K, Sellinger T, Thornton K, van Kemenade H, Wohns AW, Wong HY, Gravel S, Kern AD, Koskela J, Ralph PL, Kelleher J (2022) Efficient ancestry and mutation simulation with msprime 1.0. Genetics, 220:iyab229. pdf.

2021

Matschiner M (2021) Museum specimens tell the history of rhinoceroses. Cell, 184:4841-4842. pdf.

El Taher A, Ronco F, Matschiner M, Salzburger W, Böhne A (2021) Dynamics of sex chromosome evolution in a rapid radiation of cichlid fishes. Science Advances, 7:eabe8215. pdf.

Vilaça ST, Piccinno R, Rota-Stabelli O, Gabrielli M, Benazzo A, Matschiner M, Soares LS, Bolten AB, Bjorndal KA, Bertorelle G (2021) Divergence and hybridization in sea turtles: inferences from genome data show evidence of ancient gene flow between species. Molecular Ecology, 30:6178-6192.

Pinsky ML, Eikeset AM, Helmerson C, Bradbury IR, Bentzen P, Morris C, Gondek-Wyrozemska AT, Baalsrud HT, Brieuc MSO, Kjesbu OS, Godiksen JA, Barth JMI, Matschiner M, Stenseth NC, Jakobsen KS, Jentoft S, Star B (2021) Genomic stability through time despite decades of exploitation in cod on both sides of the Atlantic. Proceedings of the National Academy of Sciences, 118:e2025453118. pdf.

Ronco F, Matschiner M, Böhne A, Boila A, Büscher H, El Taher A, Indermaur A, Malinsky M, Ricci V, Kahmen A, Jentoft S, Salzburger W (2021) Drivers and dynamics of a massive adaptive radiation in cichlid fishes. Nature, 589:76-81. pdf. code.

2020

Matschiner M, Böhne A, Ronco F, Salzburger W (2020) The genomic timeline of cichlid fish diversification across continents. Nature Communications, 11:5859. pdf. code. files.

Malinsky M, Matschiner M, Svardal H (2020) Dsuite ‐ Fast D‐statistics and related admixture evidence from VCF files. Molecular Ecology Resources, 21:584-595. pdf.

Roth O, Solbakken MH, Tørresen OK, Bayer T, Matschiner M, Baalsrud H, Hoff SNK, Brieuc MSO, Haase D, Hanel R, Reusch TBH, Jentoft S (2020) Evolution of male pregnancy associated with remodeling of canonical vertebrate immunity in seahorses and pipefishes. Proceedings of the National Academy of Sciences, 117:9431-9439. pdf.

Barth JMI, Gubili C, Matschiner M (shared first co-author), Tørresen OK, Watanabe S, Egger B, Han Y-S, Feunteun E, Sommaruga R, Jehle R, Schabetsberger R (2020) Stable species boundaries despite ten million years of hybridization in tropical eels. Nature Communications, 11:1433. pdf. code.

Fang B, Merilä, Matschiner M, Momigliano P (2020) Estimating uncertainty in divergence times among three-spined stickleback clades using the multispecies coalescent. Molecular Phylogenetics and Evolution, 142:106646. pdf.

2019

Ceballos SG, Roesti M, Matschiner M, Fernández D, Damerau M, Hanel R, Salzburger W (2019) Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries. BMC Evolutionary Biology, 19:13. pdf.

Varadharajan S, Rastas P, Löytynoja A, Matschiner M, Calboli FCF, Guo B, Nederbragt AJ, Jakobsen KS, Merilä J (2019) A high-quality assembly of the nine-spined stickleback (Pungitius pungitius) genome. Genome Biology and Evolution, 11:3291-3308. pdf.

Matschiner M, Salzburger W (2019) Evolution: Genomic signatures of mimicry and mimicry of genomic signatures. Current Biology, 29:R363-R365. pdf.

Musilova Z, Cortesi F, Matschiner M, Davies WIL, Patel JS, Stieb SM, de Busserolles F, Malmstrøm M, Tørresen OK, Brown CJ, Mountford JK, Hanel R, Stenkamp DL, Jakobsen KS, Carleton KL, Jentoft S, Marshall J, Salzburger W (2019) Vision using multiple distinct rod opsins in deep-sea fishes. Science, 364:588-592. pdf. code. files.

Bouckaert R, Vaughan TG, Barido-Sottani J, Duchêne S, Fourment M, Gavryushkina A, Heled J, Jones G, Kühnert D, de Maio N, Matschiner M, Mendes FK, Müller NF, Ogilvie H, du Plessis L, Popinga A, Rambaut A, Rasmussen D, Siveroni I, Suchard MA, Wu C-H, Xie W, Zhang C, Stadler T, Drummond AJ (2019) BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLOS Computational Biology, 15:e1006650. pdf.

Matschiner M (2019) Selective sampling of species and fossils influences age estimates under the fossilized birth-death model. Frontiers in Genetics, 10:1064. pdf. code.

Matschiner M (2019) Gondwanan vicariance or trans-Atlantic dispersal of cichlid fishes: a review of the molecular evidence. Hydrobiologia, 832:9-37. pdf.

Langangen Ø, Färber L, Stige LC, Diekert FK, Barth JMI, Matschiner M, Berg PR, Star B, Stenseth NC, Jentoft S, Durant JM (2019) Ticket to spawn: Combining economic and genetic data to evaluate the effect of climate and demographic structure on spawning distribution in Atlantic cod. Global Change Biology, 25:134-143. pdf.

2018

Malmstrøm M, Britz R, Matschiner M, Tørresen OK, Hadiaty RK, Yaakob N, Tan YH, Jakobsen KS, Salzburger W, Rüber L (2018) The most developmentally truncated fishes show extensive Hox gene loss and miniaturized genomes. Genome Biology and Evolution, 10:1088-1103. pdf.

Runemark A, Trier CN, Eroukhmanoff F, Hermansen JS, Matschiner M, Ravinet M, Elgvin TO, Saetre GP (2018) Variation and constraints in hybrid genome formation. Nature Ecology and Evolution, 2:549-556. pdf.

Stange M, Sánchez-Villagra MR, Salzburger W, Matschiner M (2018) Bayesian divergence-time estimation with genome-wide SNP data of sea catfishes (Ariidae) supports Miocene closure of the Panamanian Isthmus. Systematic Biology, 67:681-699. pdf. code.

Toljagić O, Voje KL, Matschiner M, Liow LH, Hansen T (2018) Millions of years behind: slow adaptation of ruminants to grasslands. Systematic Biology, 67:145-157. pdf.

2017

Baalsrud HT, Voje KL, Tørresen OK, Solbakken MH, Matschiner M, Malmstrøm M, Hanel R, Salzburger W, Jakobsen KS, Jentoft S (2017) Evolution of hemoglobin genes in codfishes influenced by ocean depth. Scientific Reports, 7:7956. pdf.

Barth JMI, Damerau M, Matschiner M, Jentoft S, Hanel R (2017) Genomic differentiation and demographic histories of Atlantic and Indo-Pacific yellowfin tuna (Thunnus albacares) populations. Genome Biology and Evolution, 9:1084-1098. pdf.

Malmstrøm M, Matschiner M, Tørresen OK, Jakobsen KS, Jentoft S (2017) Whole genome sequencing data and de novo draft assemblies for 66 teleost species. Scientific Data, 4:160132. pdf.

Matschiner M, Musilová Z, Barth JMI, Starostová Z, Salzburger W, Steel M, Bouckaert R (2017) Bayesian phylogenetic estimation of clade ages supports trans-Atlantic dispersal of cichlid fishes. Systematic Biology, 66:3-22. pdf.

Meyer BS, Matschiner M (shared first co-author), Salzburger W (2017) Disentangling incomplete lineage sorting and introgression to refine species-tree estimates for Lake Tanganyika cichlid fishes. Systematic Biology, 66:531-550. pdf.

2016

Malmstrøm M, Matschiner M (shared first co-author), Tørresen OK, Star B, Snipen LG, Hansen TF, Baalsrud HT, Nederbragt AJ, Hanel R, Salzburger W, Stenseth NC, Jakobsen KS, Jentoft S (2016) Evolution of the immune system influences speciation rates in teleost fishes. Nature Genetics, 48:1204-1210. pdf. code.

Gante HF, Matschiner M, Malmstrøm M, Jakobsen KS, Jentoft S, Salzburger W (2016) Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika. Molecular Ecology, 25:6143-6161. pdf. files.

Matschiner M (2016) Fitchi: haplotype genealogy graphs based on the Fitch algorithm. Bioinformatics, 32:1250-1252. pdf.

2015

Meyer BS, Matschiner M, Salzburger W (2015) A tribal level phylogeny of Lake Tanganyika cichlid fishes based on a genomic multi-marker approach. Molecular Phylogenetics and Evolution, 83:56-71. pdf.

Colombo M, Damerau M, Hanel R, Salzburger W, Matschiner M (2015) Diversity and disparity through time in the adaptive radiation of Antarctic notothenioid fishes. Journal of Evolutionary Biology, 28:376-394. pdf.

Matschiner M, Colombo M, Damerau M, Ceballos S, Hanel R, Salzburger W (2015) The adaptive radiation of notothenioid fishes in the waters of Antarctica. In: Extremophile Fishes (eds Riesch R, Tobler M, Plath M), pp. 35-57. Springer International Publishing, Switzerland. pdf.

2009-2014

Damerau M, Matschiner M, Salzburger W, Hanel R (2014) Population divergences despite long pelagic larval stages: lessons from crocodile icefishes (Channichthyidae). Molecular Ecology, 23:284-299. pdf.

Barth JMI, Matschiner M, Robertson BR (2013) Phylogenetic position and subspecies divergence of the endangered New Zealand Dotterel (Charadrius obscurus). PLOS ONE, 8:e78068. pdf.

Damerau M, Matschiner M, Salzburger W, Hanel R (2012) Comparative population genetics of seven notothenioid fish species in the southern Scotia Arc, Antarctica. Polar Biology 35:1073-1086. pdf.

Palandaçiç A, Matschiner M, Zupançiç P, Sloj A (2012) Fish migrate underground: the example of Delminichthys adspersus (Cyprinidae). Molecular Ecology, 21:1658-1671. pdf.

Sands C, Arntz W, Janussen D, Agrawal S, Damerau M, Hauquier F, Havermans C, Hirse T, Matschiner M, Knust R, Koschnick N, Mintenbeck K, Montiel A, Rath L, Robert H, Rose A, Rossi S, Storch D, Uriz I, Wang C (2012) Biodiversity, biogeography, phylogeography and phylogenetics in a latitudinal cline. Reports on Polar and Marine Research 644: 13-46. pdf.

Rutschmann S, Matschiner M, Damerau M, Muschick M, Lehmann MF, Hanel R, Salzburger W (2011) Parallel ecological diversification in Antarctic notothenioid fishes as evidence for adaptive radiation. Molecular Ecology 20:4707-4721. pdf.

Matschiner M, Hanel R, Salzburger W (2011) On the origin and trigger of the notothenioid adaptive radiation. PLOS ONE 6:e18911. pdf.

Matschiner M, Hanel R, Salzburger W (2010) Phylogeography and speciation processes in marine fishes and fishes from large freshwater lakes. In: Phylogeography: Concepts, Intraspecific Patterns and Speciation Processes (ed Rutgers DS), pp. 1-29. Nova Science Publishers, New York. pdf.

Matschiner M, Hanel R, Salzburger W (2009) Gene flow by larval dispersal in the Antarctic notothenioid fish Gobionotothen gibberifrons. Molecular Ecology 18:2574-2587. pdf.

Matschiner M, Salzburger W (2009) TANDEM: integrating automated allele binning into genetics and genomics workflows. Bioinformatics, 25:1982-1983. pdf.